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Hot Topics #31 (July 22, 2024)

Peptide binder design, SE(3) motif scaffolding, AlphaFlow improvement, and more.
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Hot Topics #30 (July 15, 2024)
Non-standard proteins and AlphaFold3, fusing approaches for protein structure prediction, predicting mutation effects, learning temporal distances, and…
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Jacob Pettit
Hot Topics #29 (Jul 8, 2024)
Discrete-Continuous diffusion models, diffusion-based priors, Dirichlet flow matching, and more.
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Jacob Pettit
Hot Topics #28 (July 1, 2024)
ESM3, SaprotHub, metric flow matching, investigating pLMs, and more.
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Jacob Pettit
Hot Topics #27 (June 17, 2024)
FoldFlow-2, BindGPT, compute-optimal pLMs, and deep learning for protein-ligand docking.
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Jacob Pettit
Hot Topics #26 (June 10, 2024)
Neural Flow Diffusion Models, benchmarking AlphaFold3, evolutionary-scale diffusion, and more.
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Jacob Pettit
Hot Topics #25 (June 3, 2024)
Transformers can do arithmetic, designing and scaffolding proteins, diffusion LMs, and more.
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Jacob Pettit
Hot Topics #24 (May 27, 2024)
Flow matching for protein ensembles, pLM guided protein fitness prediction, LLM interpretability, and more.
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Jacob Pettit
The Merge
The Merge
Papers and code that are on my radar, sent out once a week. Focusing on machine learning (ML) and ML for Bio.
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